Healthy Carrot Muffins

Our Carrot Muffins recipe is packed with Greek yogurt, applesauce, shredded carrots, and whole wheat flour for a guilt-free snack or breakfast, without sacrificing flavor.

This healthy Carrot Muffins are packed with wholesome ingredients you can feel good about but still has the soft, moist, and flavor of carrot cake we all love!

The Yummiest Carrot Cake Muffins

I have been making these healthy carrot muffins on repeat for years and my family devours them for breakfast, a healthy after-school snack, and everything in between. They're made with wholesome ingredients that I usually already have on hand and they don't sacrifice on flavor or texture. Whether you're meal prepping for the week or need a quick grab-and-go snack, these carrot banana muffins are the answer!

I'm recently obsessed with these silicone muffin pans; the muffins come out so easily every time, with hardly any crumbs in the pan to clean.

Don't miss my other muffin recipes, like Protein Banana Muffins, Bran Muffins, Healthy Pumpkin Muffins, Healthy Muffins, Applesauce Muffins, or Skinny Chocolate Muffins!

How to make Healthy Carrot Muffins:

Make Muffin Batter: Mix butter and sugar in a mixing bowl until well combined. Stir in yogurt, applesauce, eggs, pumpkin, banana, and carrots until well combined. In a separate bowl, mix together the flour, salt, baking soda, and cinnamon. Pour the wet ingredients into the dry ingredients and stir only until just combined.

Bake: Scoop the batter into the cups on your muffin tin. Bake at 375°F for 15-18 minutes, or until a toothpick inserted comes out clean. Let these carrot cake muffins cool on a cooling rack then store any leftovers in an airtight container for up to 5 days, or freeze for up to 3 months. If you love this recipe, try my new Carrot Cake Sheet Cake!

These Carrot Cake Muffins have the flavor of carrot cake but in a healthier muffin form that is so easy to make in under 30 minutes!
This healthy Carrot Muffins are packed with wholesome ingredients you can feel good about but still has the soft, moist, and flavor of carrot cake we all love!
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Carrot Muffins

We love these healthy carrots muffins made with simple, wholesome ingredients like Greek yogurt, oats, banana, and shredded carrots. They're perfect for meal prep, kid-approved, and ready in under 30 minutes.
Course side course, Snack
Cuisine American
Prep Time 10 minutes
Cook Time 15 minutes
Total Time 25 minutes
Servings 18
Calories 151kcal
Cost 5

Equipment

Ingredients

Instructions

  • Add sugar, butter to a mixing bowl and mix well to combine. Add yogurt, applesauce, eggs, vanilla, pumpkin, carrots and banana and stir well.
    ⅓ cup brown sugar, ⅓ cup granulated sugar, ¼ cup butter, ⅓ cup plain Greek yogurt, ⅓ cup unsweetened applesauce, 3 eggs, 1 teaspoon vanilla extract, 1 cup pumpkin puree, 1 ¼ cups shredded carrots, 2 ripe bananas
  • In a separate mixing bowl stir together flour, oats, salt, baking soda and cinnamon. Add to the wet mixture and stir, just until combined. Divide batter among greased or lined muffin cups (should make about 18 muffins).
    1 cup rolled oats, 2 cups flour, 1 teaspoon kosher salt, 2 teaspoon baking soda, 2 ½ teaspoon cinnamon
  • Bake at 375 degrees F for 15-18 minutes or until a toothpick inserted in the center comes out clean.

Video

Notes

Freezing Instructions: Allow oatmeal carrot muffins to cool completely then place in a freezer safe bag and store them in the freezer for up to 3 months.  To thaw, remove them from the freezer and allow them to come to room temperature.  You can also microwave one frozen muffin for about 20 seconds.
Mini Muffins: Bake for 10-14 minutes.
Egg Allergy: Mix 3 tablespoons of flaxseed with ½ cup plus 1 tablespoon of water. Use in place of the 3 eggs called for.
Vegan Carrot Muffins: Replace eggs with flax mixture above, and use vegan yogurt. 
Gluten-Free Carrot Muffins: Substitute gluten-free flour.
Carrot Walnut Muffins: Add ½ cup of chopped walnuts, stirred in at the end..
Raisin Carrot Muffins: Add ½ cup of raisins or dried cranberries, stirred in at the end.
Carrot Zucchini Muffins: Add ½ cup grated zucchini (squeeze excress moisture out before adding to the batter in step 1).
Apple Carrot Muffins: Add ½ cup diced apples to the batter in step 1.

Nutrition

Calories: 151kcal | Carbohydrates: 26g | Protein: 4g | Fat: 4g | Saturated Fat: 2g | Cholesterol: 34mg | Sodium: 312mg | Potassium: 192mg | Fiber: 3g | Sugar: 11g | Vitamin A: 3730IU | Vitamin C: 2mg | Calcium: 30mg | Iron: 1mg

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I originally shared this recipe January 2022. Updated March 2026.



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